Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2937303..2937446 | Replicon | chromosome |
| Accession | NZ_CP117852 | ||
| Organism | Salmonella enterica subsp. enterica serovar Mbandaka strain SM_F28R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2937341..2937444 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2937303..2937446 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTZ66_RS14235 | 2933726..2934424 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PTZ66_RS14240 | 2934448..2935104 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PTZ66_RS14245 | 2935212..2935442 | - | 231 | WP_017441952.1 | DNA polymerase III subunit theta | - |
| PTZ66_RS14250 | 2935580..2935954 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| PTZ66_RS14255 | 2935955..2936830 | + | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| PTZ66_RS14260 | 2936847..2937200 | + | 354 | WP_017441954.1 | YebY family protein | - |
| - | 2937303..2937446 | - | 144 | - | - | Antitoxin |
| - | 2937341..2937444 | + | 104 | - | - | Toxin |
| PTZ66_RS14265 | 2937565..2937912 | - | 348 | Protein_2770 | tyrosine-type recombinase/integrase | - |
| PTZ66_RS14270 | 2937924..2938007 | + | 84 | Protein_2771 | phage tail protein | - |
| PTZ66_RS14275 | 2938181..2940601 | + | 2421 | WP_024149295.1 | type III secretion system effector SspH3 | - |
| PTZ66_RS14280 | 2940743..2941271 | + | 529 | Protein_2773 | transposase | - |
| PTZ66_RS14285 | 2941417..2941557 | - | 141 | WP_031615664.1 | hypothetical protein | - |
| PTZ66_RS14290 | 2941723..2941992 | - | 270 | WP_077907250.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2940933..2941271 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272398 NZ_CP117852:2937341-2937444 [Salmonella enterica subsp. enterica serovar Mbandaka]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT272398 NZ_CP117852:c2937446-2937303 [Salmonella enterica subsp. enterica serovar Mbandaka]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
