Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4107621..4107764 | Replicon | chromosome |
| Accession | NZ_CP117851 | ||
| Organism | Salmonella enterica subsp. enterica serovar Mbandaka strain SM_B30R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4107623..4107726 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4107621..4107764 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTZ67_RS20060 | 4103075..4103344 | + | 270 | WP_077907250.1 | hypothetical protein | - |
| PTZ67_RS20065 | 4103510..4103650 | + | 141 | WP_031615664.1 | hypothetical protein | - |
| PTZ67_RS20070 | 4103796..4104324 | - | 529 | Protein_3911 | transposase | - |
| PTZ67_RS20075 | 4104344..4104436 | - | 93 | WP_230855586.1 | hypothetical protein | - |
| PTZ67_RS20080 | 4104466..4106886 | - | 2421 | WP_024149295.1 | type III secretion system effector SspH3 | - |
| PTZ67_RS20085 | 4107060..4107143 | - | 84 | Protein_3914 | phage tail protein | - |
| PTZ67_RS20090 | 4107155..4107502 | + | 348 | Protein_3915 | tyrosine-type recombinase/integrase | - |
| - | 4107621..4107764 | + | 144 | - | - | Antitoxin |
| - | 4107623..4107726 | - | 104 | - | - | Toxin |
| PTZ67_RS20095 | 4107867..4108220 | - | 354 | WP_017441954.1 | YebY family protein | - |
| PTZ67_RS20100 | 4108237..4109112 | - | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| PTZ67_RS20105 | 4109113..4109487 | - | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| PTZ67_RS20110 | 4109625..4109855 | + | 231 | WP_017441952.1 | DNA polymerase III subunit theta | - |
| PTZ67_RS20115 | 4109963..4110619 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PTZ67_RS20120 | 4110643..4111341 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 4103796..4104134 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272383 NZ_CP117851:c4107726-4107623 [Salmonella enterica subsp. enterica serovar Mbandaka]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT272383 NZ_CP117851:4107621-4107764 [Salmonella enterica subsp. enterica serovar Mbandaka]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
