Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3004218..3004361 | Replicon | chromosome |
| Accession | NZ_CP117850 | ||
| Organism | Salmonella enterica subsp. enterica serovar Mbandaka strain SM_F22R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3004256..3004359 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3004218..3004361 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTZ65_RS14670 | 3000641..3001339 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PTZ65_RS14675 | 3001363..3002019 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PTZ65_RS14680 | 3002127..3002357 | - | 231 | WP_017441952.1 | DNA polymerase III subunit theta | - |
| PTZ65_RS14685 | 3002495..3002869 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| PTZ65_RS14690 | 3002870..3003745 | + | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| PTZ65_RS14695 | 3003762..3004115 | + | 354 | WP_017441954.1 | YebY family protein | - |
| - | 3004218..3004361 | - | 144 | - | - | Antitoxin |
| - | 3004256..3004359 | + | 104 | - | - | Toxin |
| PTZ65_RS14700 | 3004480..3004827 | - | 348 | Protein_2857 | tyrosine-type recombinase/integrase | - |
| PTZ65_RS14705 | 3004839..3004922 | + | 84 | Protein_2858 | phage tail protein | - |
| PTZ65_RS14710 | 3005096..3007516 | + | 2421 | WP_024149295.1 | type III secretion system effector SspH3 | - |
| PTZ65_RS14715 | 3007658..3008186 | + | 529 | Protein_2860 | transposase | - |
| PTZ65_RS14720 | 3008332..3008472 | - | 141 | WP_031615664.1 | hypothetical protein | - |
| PTZ65_RS14725 | 3008638..3008907 | - | 270 | WP_077907250.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 3007848..3008186 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272350 NZ_CP117850:3004256-3004359 [Salmonella enterica subsp. enterica serovar Mbandaka]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT272350 NZ_CP117850:c3004361-3004218 [Salmonella enterica subsp. enterica serovar Mbandaka]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
