Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986000..1986268 | Replicon | chromosome |
| Accession | NC_017628 | ||
| Organism | Escherichia coli IHE3034 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986038..1986140 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986000..1986268 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECOK1_RS10180 | 1983157..1984596 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECOK1_RS10185 | 1984714..1984950 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECOK1_RS10190 | 1985055..1985246 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECOK1_RS10195 | 1985247..1985903 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1986000..1986268 | + | 269 | - | - | Antitoxin |
| - | 1986038..1986140 | - | 103 | - | - | Toxin |
| ECOK1_RS10205 | 1986298..1986639 | - | 342 | WP_000984819.1 | YebY family protein | - |
| ECOK1_RS10210 | 1986652..1987524 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| ECOK1_RS10215 | 1987528..1987902 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECOK1_RS10220 | 1988041..1988271 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECOK1_RS10225 | 1988373..1989029 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| ECOK1_RS10230 | 1989052..1989714 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T27234 NC_017628:c1986140-1986038 [Escherichia coli IHE3034]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT27234 NC_017628:1986000-1986268 [Escherichia coli IHE3034]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
