Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | FicTA/Fic(toxin) |
Location | 1103894..1104690 | Replicon | chromosome |
Accession | NZ_CP117821 | ||
Organism | Xylella fastidiosa strain ICMP 8731 |
Toxin (Protein)
Gene name | VbhT | Uniprot ID | Q87CQ8 |
Locus tag | PT013_RS04830 | Protein ID | WP_004088112.1 |
Coordinates | 1103894..1104505 (-) | Length | 204 a.a. |
Antitoxin (Protein)
Gene name | VbhA | Uniprot ID | B2I551 |
Locus tag | PT013_RS04835 | Protein ID | WP_004088114.1 |
Coordinates | 1104502..1104690 (-) | Length | 63 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PT013_RS04785 (PT013_04785) | 1099349..1100236 | - | 888 | WP_012382597.1 | YdaU family protein | - |
PT013_RS04790 (PT013_04790) | 1100233..1101021 | - | 789 | WP_011097897.1 | Bro-N domain-containing protein | - |
PT013_RS04795 (PT013_04795) | 1101018..1101650 | - | 633 | WP_004088094.1 | Bro-N domain-containing protein | - |
PT013_RS04800 (PT013_04800) | 1101647..1101910 | - | 264 | WP_228446177.1 | hypothetical protein | - |
PT013_RS04805 (PT013_04805) | 1101928..1102143 | - | 216 | WP_012382598.1 | hypothetical protein | - |
PT013_RS04810 (PT013_04810) | 1102173..1102361 | - | 189 | WP_004088102.1 | hypothetical protein | - |
PT013_RS04815 (PT013_04815) | 1102389..1102580 | - | 192 | WP_004088104.1 | hypothetical protein | - |
PT013_RS04820 (PT013_04820) | 1102839..1103084 | - | 246 | WP_004088108.1 | hypothetical protein | - |
PT013_RS04825 (PT013_04825) | 1103169..1103843 | + | 675 | WP_012382600.1 | helix-turn-helix transcriptional regulator | - |
PT013_RS04830 (PT013_04830) | 1103894..1104505 | - | 612 | WP_004088112.1 | Fic/DOC family protein | Toxin |
PT013_RS04835 (PT013_04835) | 1104502..1104690 | - | 189 | WP_004088114.1 | antitoxin VbhA family protein | Antitoxin |
PT013_RS04840 (PT013_04840) | 1105082..1105618 | + | 537 | WP_012382601.1 | hypothetical protein | - |
PT013_RS04845 (PT013_04845) | 1105615..1106028 | + | 414 | WP_004088056.1 | DUF1566 domain-containing protein | - |
PT013_RS04850 (PT013_04850) | 1106025..1106426 | + | 402 | WP_004088054.1 | hypothetical protein | - |
PT013_RS04855 (PT013_04855) | 1106423..1106572 | + | 150 | WP_012382602.1 | hypothetical protein | - |
PT013_RS04860 (PT013_04860) | 1106790..1106936 | + | 147 | WP_225621633.1 | hypothetical protein | - |
PT013_RS04865 (PT013_04865) | 1106959..1107150 | + | 192 | WP_012382603.1 | hypothetical protein | - |
PT013_RS04870 (PT013_04870) | 1107171..1107515 | + | 345 | WP_004088346.1 | hypothetical protein | - |
PT013_RS04875 (PT013_04875) | 1107555..1108376 | + | 822 | WP_004088345.1 | DUF2303 family protein | - |
PT013_RS04880 (PT013_04880) | 1108392..1109318 | + | 927 | WP_004088344.1 | phage recombination protein Bet | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 204 a.a. Molecular weight: 22832.60 Da Isoelectric Point: 5.1271
>T272306 WP_004088112.1 NZ_CP117821:c1104505-1103894 [Xylella fastidiosa]
MKYAGDRGDPYLDSETGVLRNLLGIRDQGGLDKIESTLSFLRTSELRERPVKGKFDLAHLQEIHNRLFQDVYDWAGQIRQ
VEISKGNTMFAQQIAIQSAAQQIFGQLAKERFLCGLDAEEFSKRAGDYLGEINVLHPFREGNGRTQREFIAQLAQRAGYR
IDWGVVSQADMIKASIDAYNGDSSGLASIIREGISDQLFKDNE
MKYAGDRGDPYLDSETGVLRNLLGIRDQGGLDKIESTLSFLRTSELRERPVKGKFDLAHLQEIHNRLFQDVYDWAGQIRQ
VEISKGNTMFAQQIAIQSAAQQIFGQLAKERFLCGLDAEEFSKRAGDYLGEINVLHPFREGNGRTQREFIAQLAQRAGYR
IDWGVVSQADMIKASIDAYNGDSSGLASIIREGISDQLFKDNE
Download Length: 612 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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