Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YoeB-YefM |
Location | 2787167..2787669 | Replicon | chromosome |
Accession | NZ_CP117811 | ||
Organism | Lentisphaera profundi strain SAORIC-696 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | PQO03_RS11455 | Protein ID | WP_274150397.1 |
Coordinates | 2787167..2787421 (-) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | PQO03_RS11460 | Protein ID | WP_274150398.1 |
Coordinates | 2787418..2787669 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PQO03_RS11425 (PQO03_11425) | 2782712..2783086 | - | 375 | WP_274150392.1 | hypothetical protein | - |
PQO03_RS11430 (PQO03_11430) | 2783410..2783706 | - | 297 | WP_274150393.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
PQO03_RS11435 (PQO03_11435) | 2783703..2783906 | - | 204 | WP_274150394.1 | addiction module protein | - |
PQO03_RS11440 (PQO03_11440) | 2784317..2784691 | - | 375 | WP_274150395.1 | hypothetical protein | - |
PQO03_RS11445 (PQO03_11445) | 2784833..2785357 | - | 525 | WP_274150396.1 | hypothetical protein | - |
PQO03_RS11450 (PQO03_11450) | 2785841..2787010 | - | 1170 | WP_274149230.1 | transposase | - |
PQO03_RS11455 (PQO03_11455) | 2787167..2787421 | - | 255 | WP_274150397.1 | Txe/YoeB family addiction module toxin | Toxin |
PQO03_RS11460 (PQO03_11460) | 2787418..2787669 | - | 252 | WP_274150398.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
PQO03_RS11465 (PQO03_11465) | 2787820..2788191 | - | 372 | WP_274150399.1 | hypothetical protein | - |
PQO03_RS11470 (PQO03_11470) | 2788943..2789302 | - | 360 | WP_274150400.1 | hypothetical protein | - |
PQO03_RS11475 (PQO03_11475) | 2790270..2790530 | - | 261 | WP_274150401.1 | hypothetical protein | - |
PQO03_RS11480 (PQO03_11480) | 2790909..2791247 | - | 339 | WP_274150402.1 | hypothetical protein | - |
PQO03_RS11485 (PQO03_11485) | 2791306..2791704 | - | 399 | WP_274150403.1 | phosphopantetheine-binding protein | - |
PQO03_RS11490 (PQO03_11490) | 2791751..2792461 | - | 711 | WP_274150404.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | - | 2777256..2801182 | 23926 | |
- | inside | Integron | - | fcl | 227..2808340 | 2808113 | |
- | inside | Integron | - | - | 2779738..2789640 | 9902 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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