Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /BrnT(toxin) |
Location | 1908609..1909080 | Replicon | chromosome |
Accession | NZ_CP117811 | ||
Organism | Lentisphaera profundi strain SAORIC-696 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | PQO03_RS07595 | Protein ID | WP_274149248.1 |
Coordinates | 1908609..1908869 (+) | Length | 87 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | PQO03_RS07600 | Protein ID | WP_274149250.1 |
Coordinates | 1908859..1909080 (+) | Length | 74 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PQO03_RS07550 (PQO03_07550) | 1903793..1904062 | + | 270 | WP_274149237.1 | hypothetical protein | - |
PQO03_RS07555 (PQO03_07555) | 1904139..1904744 | + | 606 | WP_274149238.1 | hypothetical protein | - |
PQO03_RS07560 (PQO03_07560) | 1905286..1905765 | + | 480 | WP_274149239.1 | acyltransferase | - |
PQO03_RS07565 (PQO03_07565) | 1905855..1906367 | + | 513 | WP_274149240.1 | hypothetical protein | - |
PQO03_RS07570 (PQO03_07570) | 1906423..1906875 | + | 453 | WP_274149241.1 | hypothetical protein | - |
PQO03_RS07575 (PQO03_07575) | 1906948..1907340 | + | 393 | WP_274149243.1 | DUF6334 family protein | - |
PQO03_RS07580 (PQO03_07580) | 1907470..1907676 | + | 207 | WP_274149244.1 | type II toxin-antitoxin system VapB family antitoxin | - |
PQO03_RS07585 (PQO03_07585) | 1907676..1908065 | + | 390 | WP_274149226.1 | PIN domain nuclease | - |
PQO03_RS07590 (PQO03_07590) | 1908224..1908475 | + | 252 | WP_274149246.1 | hypothetical protein | - |
PQO03_RS07595 (PQO03_07595) | 1908609..1908869 | + | 261 | WP_274149248.1 | BrnT family toxin | Toxin |
PQO03_RS07600 (PQO03_07600) | 1908859..1909080 | + | 222 | WP_274149250.1 | hypothetical protein | Antitoxin |
PQO03_RS07605 (PQO03_07605) | 1909231..1909422 | + | 192 | WP_274149252.1 | type II toxin-antitoxin system VapB family antitoxin | - |
PQO03_RS07610 (PQO03_07610) | 1909422..1909802 | + | 381 | WP_274149254.1 | PIN domain-containing protein | - |
PQO03_RS07615 (PQO03_07615) | 1910206..1910448 | + | 243 | WP_274149256.1 | type II toxin-antitoxin system ParD family antitoxin | - |
PQO03_RS07620 (PQO03_07620) | 1910441..1910746 | + | 306 | WP_274149258.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
PQO03_RS07625 (PQO03_07625) | 1910833..1911288 | + | 456 | WP_274149259.1 | hypothetical protein | - |
PQO03_RS07630 (PQO03_07630) | 1911433..1911924 | + | 492 | WP_274149261.1 | hypothetical protein | - |
PQO03_RS07635 (PQO03_07635) | 1912023..1912493 | + | 471 | WP_274149263.1 | hypothetical protein | - |
PQO03_RS07640 (PQO03_07640) | 1912698..1912880 | + | 183 | WP_274149264.1 | hypothetical protein | - |
PQO03_RS07645 (PQO03_07645) | 1912962..1913450 | + | 489 | WP_274149266.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | - | 1873130..1958826 | 85696 | |
- | inside | Integron | - | fcl | 227..2808340 | 2808113 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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