Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008742..2008951 | Replicon | chromosome |
| Accession | NZ_CP117750 | ||
| Organism | Enterobacter hormaechei strain 2022CK-00700 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008755..2008858 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008742..2008951 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTC84_RS09800 (PTC84_09800) | 2005010..2006458 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PTC84_RS09805 (PTC84_09805) | 2006565..2006804 | + | 240 | WP_003859885.1 | YebV family protein | - |
| PTC84_RS09810 (PTC84_09810) | 2006839..2007483 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| PTC84_RS09815 (PTC84_09815) | 2007651..2008631 | + | 981 | WP_062938806.1 | VirK/YbjX family protein | - |
| PTC84_RS09820 (PTC84_09820) | 2008677..2008874 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2008742..2008951 | + | 210 | - | - | Antitoxin |
| - | 2008755..2008858 | - | 104 | - | - | Toxin |
| PTC84_RS09825 (PTC84_09825) | 2009000..2009338 | - | 339 | WP_003859787.1 | YebY family protein | - |
| PTC84_RS09830 (PTC84_09830) | 2009355..2010224 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| PTC84_RS09835 (PTC84_09835) | 2010226..2010597 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| PTC84_RS09840 (PTC84_09840) | 2010735..2010965 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PTC84_RS09845 (PTC84_09845) | 2011077..2011727 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| PTC84_RS09850 (PTC84_09850) | 2011752..2012414 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1999640..2074254 | 74614 | |
| - | inside | Prophage | - | - | 1992097..2074254 | 82157 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272242 NZ_CP117750:c2008858-2008755 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT272242 NZ_CP117750:2008742-2008951 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
