Detailed information of TA system
Overview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 3485573..3485741 | Replicon | chromosome |
Accession | NZ_CP117730 | ||
Organism | Klebsiella grimontii strain 2022CK-00781 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 3485580..3485683 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 3485573..3485741 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PTC90_RS16460 (PTC90_16455) | 3480847..3481365 | + | 519 | WP_154926358.1 | spore coat U domain-containing protein | - |
PTC90_RS16465 (PTC90_16460) | 3481384..3482148 | + | 765 | WP_148855291.1 | fimbria/pilus periplasmic chaperone | - |
PTC90_RS16470 (PTC90_16465) | 3482151..3484481 | + | 2331 | WP_148855292.1 | fimbria/pilus outer membrane usher protein | - |
PTC90_RS16475 (PTC90_16470) | 3484496..3485455 | + | 960 | WP_049085573.1 | spore coat protein U domain-containing protein | - |
- | 3485573..3485741 | + | 169 | - | - | Antitoxin |
- | 3485580..3485683 | - | 104 | - | - | Toxin |
PTC90_RS16480 (PTC90_16475) | 3485841..3486179 | - | 339 | WP_004103344.1 | YebY family protein | - |
PTC90_RS16485 (PTC90_16480) | 3486196..3487065 | - | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
PTC90_RS16490 (PTC90_16485) | 3487070..3487444 | - | 375 | WP_064411566.1 | CopC domain-containing protein YobA | - |
PTC90_RS16495 (PTC90_16490) | 3487580..3487810 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
PTC90_RS16500 (PTC90_16495) | 3487889..3488548 | + | 660 | WP_148855293.1 | exodeoxyribonuclease X | - |
PTC90_RS16505 (PTC90_16500) | 3488555..3490615 | - | 2061 | WP_116943571.1 | oligopeptidase B | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272184 NZ_CP117730:c3485683-3485580 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT272184 NZ_CP117730:3485573-3485741 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA