Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2798837..2798981 | Replicon | chromosome |
| Accession | NZ_CP117723 | ||
| Organism | Enterobacter asburiae strain 2022CK-00757 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2798843..2798946 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2798837..2798981 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTC87_RS13300 (PTC87_13300) | 2793994..2795442 | + | 1449 | WP_197745876.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PTC87_RS13305 (PTC87_13305) | 2795549..2795788 | + | 240 | WP_008500472.1 | YebV family protein | - |
| PTC87_RS13310 (PTC87_13310) | 2795823..2796467 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| PTC87_RS13315 (PTC87_13315) | 2796634..2797575 | + | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| PTC87_RS13320 (PTC87_13320) | 2797749..2798645 | + | 897 | WP_033145839.1 | benzoate transporter | - |
| - | 2798837..2798981 | + | 145 | - | - | Antitoxin |
| - | 2798843..2798946 | - | 104 | - | - | Toxin |
| PTC87_RS13325 (PTC87_13325) | 2799085..2799423 | - | 339 | WP_033145840.1 | YebY family protein | - |
| PTC87_RS13330 (PTC87_13330) | 2799440..2800309 | - | 870 | WP_033145841.1 | copper homeostasis membrane protein CopD | - |
| PTC87_RS13335 (PTC87_13335) | 2800311..2800682 | - | 372 | WP_033145842.1 | CopC domain-containing protein YobA | - |
| PTC87_RS13340 (PTC87_13340) | 2800819..2801049 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| PTC87_RS13345 (PTC87_13345) | 2801160..2801810 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| PTC87_RS13350 (PTC87_13350) | 2801835..2802497 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272165 NZ_CP117723:c2798946-2798843 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT272165 NZ_CP117723:2798837-2798981 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
