Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2634389..2634660 | Replicon | chromosome |
| Accession | NZ_CP117720 | ||
| Organism | Escherichia coli strain B1W1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2634427..2634530 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2634389..2634660 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTA75_RS12830 | 2631546..2632985 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PTA75_RS12835 | 2633103..2633339 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PTA75_RS12840 | 2633444..2633635 | + | 192 | WP_001296140.1 | YebW family protein | - |
| PTA75_RS12845 | 2633636..2634292 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2634389..2634660 | + | 272 | - | - | Antitoxin |
| - | 2634427..2634530 | - | 104 | - | - | Toxin |
| PTA75_RS12850 | 2634688..2635029 | - | 342 | WP_000976492.1 | YebY family protein | - |
| PTA75_RS12855 | 2635042..2635914 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PTA75_RS12860 | 2635918..2636292 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PTA75_RS12865 | 2636431..2636661 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PTA75_RS12870 | 2636763..2637419 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PTA75_RS12875 | 2637443..2638105 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272140 NZ_CP117720:c2634530-2634427 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT272140 NZ_CP117720:2634389-2634660 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
