Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2052932..2053203 | Replicon | chromosome |
| Accession | NZ_CP117717 | ||
| Organism | Escherichia coli strain B1S11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2053062..2053165 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2052932..2053203 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTA69_RS09945 | 2049487..2050149 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PTA69_RS09950 | 2050173..2050829 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PTA69_RS09955 | 2050931..2051161 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PTA69_RS09960 | 2051300..2051674 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PTA69_RS09965 | 2051678..2052550 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| PTA69_RS09970 | 2052563..2052904 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2052932..2053203 | - | 272 | - | - | Antitoxin |
| - | 2053062..2053165 | + | 104 | - | - | Toxin |
| PTA69_RS09975 | 2053300..2053956 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| PTA69_RS09980 | 2053957..2054148 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PTA69_RS09985 | 2054253..2054489 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PTA69_RS09990 | 2054607..2056046 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272112 NZ_CP117717:2053062-2053165 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT272112 NZ_CP117717:c2053203-2052932 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
