Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1993898..1994169 | Replicon | chromosome |
| Accession | NZ_CP117714 | ||
| Organism | Escherichia coli strain PBS4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994028..1994131 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1993898..1994169 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTA50_RS09560 | 1990453..1991115 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PTA50_RS09565 | 1991139..1991795 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PTA50_RS09570 | 1991897..1992127 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PTA50_RS09575 | 1992266..1992640 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PTA50_RS09580 | 1992644..1993516 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PTA50_RS09585 | 1993529..1993870 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1993898..1994169 | - | 272 | - | - | Antitoxin |
| - | 1994028..1994131 | + | 104 | - | - | Toxin |
| PTA50_RS09590 | 1994266..1994922 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| PTA50_RS09595 | 1994923..1995114 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PTA50_RS09600 | 1995219..1995455 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PTA50_RS09605 | 1995573..1997012 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272085 NZ_CP117714:1994028-1994131 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT272085 NZ_CP117714:c1994169-1993898 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
