Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2048061..2048293 | Replicon | chromosome |
| Accession | NZ_CP117659 | ||
| Organism | Escherichia albertii strain BIA_13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2048189..2048291 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2048061..2048293 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS034_RS10025 | 2044992..2045654 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS034_RS10030 | 2045678..2045890 | - | 213 | Protein_1959 | carbon-nitrogen hydrolase family protein YobB | - |
| PS034_RS10035 | 2046055..2046285 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS034_RS10040 | 2046424..2046801 | + | 378 | WP_273822949.1 | CopC domain-containing protein YobA | - |
| PS034_RS10045 | 2046805..2047677 | + | 873 | Protein_1962 | copper homeostasis membrane protein CopD | - |
| PS034_RS10050 | 2047690..2048031 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2048061..2048293 | - | 233 | - | - | Antitoxin |
| - | 2048189..2048291 | + | 103 | - | - | Toxin |
| PS034_RS10055 | 2050036..2050356 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| PS034_RS10060 | 2050429..2051886 | + | 1458 | WP_273823096.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271924 NZ_CP117659:2048189-2048291 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271924 NZ_CP117659:c2048293-2048061 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
