Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2062032..2062264 | Replicon | chromosome |
| Accession | NZ_CP117647 | ||
| Organism | Escherichia albertii strain BIA_16-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2062159..2062262 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2062032..2062264 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS048_RS09980 | 2058963..2059625 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS048_RS09985 | 2059649..2059861 | - | 213 | Protein_1946 | carbon-nitrogen hydrolase family protein YobB | - |
| PS048_RS09990 | 2060026..2060256 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS048_RS09995 | 2060395..2060772 | + | 378 | WP_137649720.1 | CopC domain-containing protein YobA | - |
| PS048_RS10000 | 2060776..2061648 | + | 873 | WP_044708630.1 | copper homeostasis membrane protein CopD | - |
| PS048_RS10005 | 2061661..2062002 | + | 342 | WP_072249985.1 | YebY family protein | - |
| - | 2062032..2062264 | - | 233 | - | - | Antitoxin |
| - | 2062159..2062262 | + | 104 | - | - | Toxin |
| PS048_RS10010 | 2064018..2064338 | + | 321 | WP_273786325.1 | hypothetical protein | - |
| PS048_RS10015 | 2064411..2065868 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| PS048_RS10020 | 2066187..2066978 | - | 792 | WP_273786327.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 2055882..2079591 | 23709 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271850 NZ_CP117647:2062159-2062262 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCTCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCTCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271850 NZ_CP117647:c2062264-2062032 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGAGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGAGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
