Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2141417..2141646 | Replicon | chromosome |
| Accession | NZ_CP117643 | ||
| Organism | Escherichia albertii strain BIA_17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2141545..2141646 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2141417..2141646 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS043_RS10900 | 2138348..2139010 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS043_RS10905 | 2139034..2139246 | - | 213 | Protein_2132 | carbon-nitrogen hydrolase family protein YobB | - |
| PS043_RS10910 | 2139411..2139641 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS043_RS10915 | 2139780..2140157 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS043_RS10920 | 2140161..2141033 | + | 873 | WP_059223932.1 | copper homeostasis membrane protein CopD | - |
| PS043_RS10925 | 2141046..2141387 | + | 342 | WP_273816988.1 | YebY family protein | - |
| - | 2141417..2141646 | - | 230 | - | - | Antitoxin |
| - | 2141545..2141646 | + | 102 | - | - | Toxin |
| PS043_RS10930 | 2143315..2143635 | + | 321 | WP_054411012.1 | hypothetical protein | - |
| PS043_RS10935 | 2143708..2145165 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| PS043_RS10940 | 2145485..2146243 | - | 759 | WP_273816989.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2135267..2159662 | 24395 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T271820 NZ_CP117643:2141545-2141646 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTTTTTT
Antitoxin
Download Length: 230 bp
>AT271820 NZ_CP117643:c2141646-2141417 [Escherichia albertii]
AAAAAAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATT
AATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAGTAA
AAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
AAAAAAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATT
AATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAGTAA
AAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
