Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202324..2202556 | Replicon | chromosome |
| Accession | NZ_CP117637 | ||
| Organism | Escherichia albertii strain BIA_18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202451..2202554 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202324..2202556 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS040_RS10940 | 2199254..2199916 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS040_RS10945 | 2199940..2200152 | - | 213 | Protein_2143 | carbon-nitrogen hydrolase family protein YobB | - |
| PS040_RS10950 | 2200318..2200548 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS040_RS10955 | 2200687..2201064 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS040_RS10960 | 2201068..2201940 | + | 873 | WP_059234872.1 | copper homeostasis membrane protein CopD | - |
| PS040_RS10965 | 2201953..2202294 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2202324..2202556 | - | 233 | - | - | Antitoxin |
| - | 2202451..2202554 | + | 104 | - | - | Toxin |
| PS040_RS10970 | 2204298..2204618 | + | 321 | WP_054411012.1 | hypothetical protein | - |
| PS040_RS10975 | 2204691..2206148 | + | 1458 | WP_273783877.1 | Trk system potassium transporter TrkG | - |
| PS040_RS10980 | 2206468..2207259 | - | 792 | WP_231932500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC / espJ | 2121643..2219097 | 97454 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271795 NZ_CP117637:2202451-2202554 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271795 NZ_CP117637:c2202556-2202324 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
