Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2526341..2526573 | Replicon | chromosome |
| Accession | NZ_CP117620 | ||
| Organism | Escherichia albertii strain BIA_24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2526343..2526445 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2526341..2526573 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS039_RS12150 | 2521640..2522431 | + | 792 | WP_231932500.1 | hypothetical protein | - |
| PS039_RS12155 | 2522751..2524208 | - | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| - | 2526341..2526573 | + | 233 | - | - | Antitoxin |
| - | 2526343..2526445 | - | 103 | - | - | Toxin |
| PS039_RS12160 | 2526603..2526944 | - | 342 | WP_000976472.1 | YebY family protein | - |
| PS039_RS12165 | 2526957..2527829 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| PS039_RS12170 | 2527833..2528207 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| PS039_RS12175 | 2528346..2528576 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PS039_RS12180 | 2528742..2528954 | + | 213 | Protein_2371 | carbon-nitrogen hydrolase family protein YobB | - |
| PS039_RS12185 | 2528978..2529640 | + | 663 | WP_273809174.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271739 NZ_CP117620:c2526445-2526343 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271739 NZ_CP117620:2526341-2526573 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAA
TAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAA
TAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
