Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2132808..2133040 | Replicon | chromosome |
| Accession | NZ_CP117615 | ||
| Organism | Escherichia albertii strain BIA_25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2132936..2133038 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2132808..2133040 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS046_RS10395 | 2129738..2130400 | - | 663 | WP_149508132.1 | exodeoxyribonuclease X | - |
| PS046_RS10400 | 2130424..2130636 | - | 213 | Protein_2032 | carbon-nitrogen hydrolase family protein YobB | - |
| PS046_RS10405 | 2130802..2131032 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS046_RS10410 | 2131171..2131548 | + | 378 | WP_273813162.1 | CopC domain-containing protein YobA | - |
| PS046_RS10415 | 2131552..2132424 | + | 873 | WP_149508131.1 | copper homeostasis membrane protein CopD | - |
| PS046_RS10420 | 2132437..2132778 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2132808..2133040 | - | 233 | - | - | Antitoxin |
| - | 2132936..2133038 | + | 103 | - | - | Toxin |
| PS046_RS10425 | 2134785..2135105 | + | 321 | WP_095575779.1 | hypothetical protein | - |
| PS046_RS10430 | 2135178..2136635 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 2126657..2145543 | 18886 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271706 NZ_CP117615:2132936-2133038 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271706 NZ_CP117615:c2133040-2132808 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
