Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989115..1989347 | Replicon | chromosome |
| Accession | NZ_CP117609 | ||
| Organism | Escherichia albertii strain BIA_26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989242..1989345 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989115..1989347 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS038_RS09455 | 1986045..1986707 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS038_RS09460 | 1986731..1986943 | - | 213 | Protein_1847 | carbon-nitrogen hydrolase family protein YobB | - |
| PS038_RS09465 | 1987109..1987339 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS038_RS09470 | 1987478..1987855 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS038_RS09475 | 1987859..1988731 | + | 873 | WP_044708630.1 | copper homeostasis membrane protein CopD | - |
| PS038_RS09480 | 1988744..1989085 | + | 342 | WP_072248767.1 | YebY family protein | - |
| - | 1989115..1989347 | - | 233 | - | - | Antitoxin |
| - | 1989242..1989345 | + | 104 | - | - | Toxin |
| PS038_RS09485 | 1989966..1990544 | + | 579 | WP_059218675.1 | bfpT-regulated chaperone | - |
| PS038_RS09490 | 1991741..1992061 | + | 321 | WP_059218676.1 | hypothetical protein | - |
| PS038_RS09495 | 1992134..1993591 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271679 NZ_CP117609:1989242-1989345 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271679 NZ_CP117609:c1989347-1989115 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
