Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 922979..923211 | Replicon | chromosome |
| Accession | NZ_CP117600 | ||
| Organism | Escherichia albertii strain BIA_32 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 922981..923083 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 922979..923211 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS047_RS04645 | 918273..919064 | + | 792 | WP_237761917.1 | hypothetical protein | - |
| PS047_RS04650 | 919384..920841 | - | 1458 | WP_059220010.1 | Trk system potassium transporter TrkG | - |
| PS047_RS04655 | 920914..921234 | - | 321 | WP_000086028.1 | hypothetical protein | - |
| - | 922979..923211 | + | 233 | - | - | Antitoxin |
| - | 922981..923083 | - | 103 | - | - | Toxin |
| PS047_RS04660 | 923241..923582 | - | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| PS047_RS04665 | 923595..924467 | - | 873 | Protein_923 | copper homeostasis membrane protein CopD | - |
| PS047_RS04670 | 924471..924848 | - | 378 | WP_059278247.1 | CopC domain-containing protein YobA | - |
| PS047_RS04675 | 924987..925217 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS047_RS04680 | 925383..925595 | + | 213 | Protein_926 | carbon-nitrogen hydrolase family protein YobB | - |
| PS047_RS04685 | 925619..926281 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 914665..923582 | 8917 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271626 NZ_CP117600:c923083-922981 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271626 NZ_CP117600:922979-923211 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
