Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1953942..1954213 | Replicon | chromosome |
| Accession | NC_017625 | ||
| Organism | Escherichia coli DH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1954072..1954175 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1953942..1954213 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECDH1_RS09550 | 1950497..1951159 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECDH1_RS09555 | 1951183..1951839 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECDH1_RS09560 | 1951941..1952171 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECDH1_RS09565 | 1952310..1952684 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECDH1_RS09570 | 1952688..1953560 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ECDH1_RS09575 | 1953573..1953914 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1953942..1954213 | - | 272 | - | - | Antitoxin |
| - | 1954072..1954175 | + | 104 | - | - | Toxin |
| ECDH1_RS09585 | 1954310..1954966 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ECDH1_RS09590 | 1954967..1955158 | - | 192 | WP_000457842.1 | YebW family protein | - |
| ECDH1_RS09595 | 1955263..1955499 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECDH1_RS09600 | 1955617..1957056 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27162 NC_017625:1954072-1954175 [Escherichia coli DH1]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT27162 NC_017625:c1954213-1953942 [Escherichia coli DH1]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
