Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2074958..2075190 | Replicon | chromosome |
| Accession | NZ_CP117595 | ||
| Organism | Escherichia albertii strain BIA_35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2075085..2075188 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2074958..2075190 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS050_RS10065 | 2071887..2072550 | - | 664 | Protein_1966 | exodeoxyribonuclease X | - |
| PS050_RS10070 | 2072574..2072786 | - | 213 | Protein_1967 | carbon-nitrogen hydrolase family protein YobB | - |
| PS050_RS10075 | 2072952..2073182 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS050_RS10080 | 2073321..2073698 | + | 378 | WP_000741564.1 | CopC domain-containing protein YobA | - |
| PS050_RS10085 | 2073702..2074574 | + | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| PS050_RS10090 | 2074587..2074928 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2074958..2075190 | - | 233 | - | - | Antitoxin |
| - | 2075085..2075188 | + | 104 | - | - | Toxin |
| PS050_RS10095 | 2076911..2077060 | - | 150 | WP_002462310.1 | hypothetical protein | - |
| PS050_RS10100 | 2077326..2078783 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| PS050_RS10105 | 2079103..2079402 | - | 300 | WP_273819174.1 | hypothetical protein | - |
| PS050_RS10110 | 2079510..2079890 | + | 381 | WP_029364370.1 | transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271599 NZ_CP117595:2075085-2075188 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271599 NZ_CP117595:c2075190-2074958 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
