Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2121229..2121461 | Replicon | chromosome |
| Accession | NZ_CP117586 | ||
| Organism | Escherichia albertii strain BIA_40 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2121356..2121459 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2121229..2121461 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS042_RS10480 | 2118159..2118821 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS042_RS10485 | 2118845..2119057 | - | 213 | Protein_2046 | carbon-nitrogen hydrolase family protein YobB | - |
| PS042_RS10490 | 2119223..2119453 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS042_RS10495 | 2119592..2119969 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS042_RS10500 | 2119973..2120845 | + | 873 | WP_059234872.1 | copper homeostasis membrane protein CopD | - |
| PS042_RS10505 | 2120858..2121199 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2121229..2121461 | - | 233 | - | - | Antitoxin |
| - | 2121356..2121459 | + | 104 | - | - | Toxin |
| PS042_RS10510 | 2123203..2123523 | + | 321 | WP_059242112.1 | hypothetical protein | - |
| PS042_RS10515 | 2123596..2125053 | + | 1458 | WP_059242110.1 | Trk system potassium transporter TrkG | - |
| PS042_RS10520 | 2125373..2126164 | - | 792 | WP_231932500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271544 NZ_CP117586:2121356-2121459 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271544 NZ_CP117586:c2121461-2121229 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
