Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/HicA-HicB
Location 142848..143460 Replicon chromosome
Accession NZ_CP117586
Organism Escherichia albertii strain BIA_40

Toxin (Protein)


Gene name hicA Uniprot ID U9YXE2
Locus tag PS042_RS00630 Protein ID WP_000833473.1
Coordinates 142848..143033 (+) Length 62 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag PS042_RS00635 Protein ID WP_059235556.1
Coordinates 143050..143460 (+) Length 137 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PS042_RS00615 (138312) 138312..139607 + 1296 WP_059235552.1 Fic family protein -
PS042_RS00620 (139715) 139715..141253 + 1539 WP_002460288.1 aldehyde dehydrogenase AldB -
PS042_RS00625 (141294) 141294..142373 - 1080 WP_025238097.1 type I restriction enzyme HsdR N-terminal domain-containing protein -
PS042_RS00630 (142848) 142848..143033 + 186 WP_000833473.1 type II toxin-antitoxin system HicA family toxin Toxin
PS042_RS00635 (143050) 143050..143460 + 411 WP_059235556.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
PS042_RS00640 (143532) 143532..145496 - 1965 WP_256875795.1 glycoside hydrolase family 127 protein -
PS042_RS00645 (145507) 145507..146907 - 1401 WP_025238099.1 MFS transporter -
PS042_RS00650 (147133) 147133..147948 + 816 WP_059242247.1 AraC family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(4-59)

Antitoxin

HicB-like antitoxin of toxin-antitoxin system

(3-129)


Sequences

Toxin        


Download         Length: 62 a.a.        Molecular weight: 6800.89 Da        Isoelectric Point: 11.7053

>T271537 WP_000833473.1 NZ_CP117586:142848-143033 [Escherichia albertii]
VKSADVIAILKQHGWEHIRTRGSHHQFRHPVHPGLVTVPHPKKDIKPGTLAQIGRQAGLTF

Download         Length: 186 bp

Antitoxin


Download         Length: 137 a.a.        Molecular weight: 15193.10 Da        Isoelectric Point: 4.5486

>AT271537 WP_059235556.1 NZ_CP117586:143050-143460 [Escherichia albertii]
MFYPAYIHSDPDGSASGFFPDVPGCYFAGDTLDNAFQDARSALVAHFETLCEMNEELPLPGSVETHLVQRAQDFIGGQWL
LVDINMNQVEGRAERINITMPKRLLNKIDTYVRNNPDYANRSAFLAEAARRVLPGV

Download         Length: 411 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9YXE2

Antitoxin

Source ID Structure

References