Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2026014..2026246 | Replicon | chromosome |
| Accession | NZ_CP117580 | ||
| Organism | Escherichia albertii strain BIA_47 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2026142..2026244 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2026014..2026246 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS044_RS09765 | 2022564..2023226 | - | 663 | WP_025238865.1 | exodeoxyribonuclease X | - |
| PS044_RS09770 | 2023250..2023906 | - | 657 | WP_025238866.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PS044_RS09775 | 2024008..2024238 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS044_RS09780 | 2024377..2024754 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS044_RS09785 | 2024758..2025630 | + | 873 | WP_025238867.1 | copper homeostasis membrane protein CopD | - |
| PS044_RS09790 | 2025643..2025984 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2026014..2026246 | - | 233 | - | - | Antitoxin |
| - | 2026142..2026244 | + | 103 | - | - | Toxin |
| PS044_RS09795 | 2026866..2027445 | + | 580 | Protein_1912 | bfpT-regulated chaperone | - |
| PS044_RS09800 | 2027902..2028066 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| PS044_RS09805 | 2028640..2028960 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| PS044_RS09810 | 2029033..2030490 | + | 1458 | WP_024164813.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271500 NZ_CP117580:2026142-2026244 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271500 NZ_CP117580:c2026246-2026014 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
