Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 878744..878976 | Replicon | chromosome |
| Accession | NZ_CP117568 | ||
| Organism | Escherichia albertii strain BIA_5-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 878746..878848 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 878744..878976 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS053_RS04245 | 874042..874377 | + | 336 | WP_256878939.1 | hypothetical protein | - |
| PS053_RS04250 | 874534..874833 | + | 300 | WP_256878938.1 | hypothetical protein | - |
| PS053_RS04255 | 875153..876610 | - | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| - | 878744..878976 | + | 233 | - | - | Antitoxin |
| - | 878746..878848 | - | 103 | - | - | Toxin |
| PS053_RS04260 | 879006..879347 | - | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| PS053_RS04265 | 879360..880232 | - | 873 | WP_151401035.1 | copper homeostasis membrane protein CopD | - |
| PS053_RS04270 | 880236..880613 | - | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS053_RS04275 | 880752..880982 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS053_RS04280 | 881148..881360 | + | 213 | Protein_845 | carbon-nitrogen hydrolase family protein YobB | - |
| PS053_RS04285 | 881384..882046 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 871071..879347 | 8276 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271426 NZ_CP117568:c878848-878746 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271426 NZ_CP117568:878744-878976 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
