Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2705247..2705390 Replicon
Accession NC_017623
Organism Salmonella enterica subsp. enterica serovar Heidelberg str. B182

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2705249..2705352 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2705247..2705390 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 2705247..2705390 + 144 NuclAT_1 - Antitoxin
- 2705249..2705352 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - sopE2 2680384..2727262 46878


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T27142 NC_017623:c2705352-2705249 [Salmonella enterica subsp. enterica serovar Heidelberg str. B182]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT27142 NC_017623:2705247-2705390 [Salmonella enterica subsp. enterica serovar Heidelberg str. B182]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References