Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3434007..3434239 | Replicon | chromosome |
| Accession | NZ_CP117562 | ||
| Organism | Escherichia albertii strain BIA_7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3434134..3434237 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3434007..3434239 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS049_RS16925 | 3430937..3431599 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS049_RS16930 | 3431623..3431835 | - | 213 | Protein_3285 | carbon-nitrogen hydrolase family protein YobB | - |
| PS049_RS16935 | 3432001..3432231 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS049_RS16940 | 3432370..3432747 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS049_RS16945 | 3432751..3433623 | + | 873 | WP_059234872.1 | copper homeostasis membrane protein CopD | - |
| PS049_RS16950 | 3433636..3433977 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 3434007..3434239 | - | 233 | - | - | Antitoxin |
| - | 3434134..3434237 | + | 104 | - | - | Toxin |
| PS049_RS16955 | 3435981..3436301 | + | 321 | WP_054411012.1 | hypothetical protein | - |
| PS049_RS16960 | 3436374..3437831 | + | 1458 | WP_273820342.1 | Trk system potassium transporter TrkG | - |
| PS049_RS16965 | 3438151..3438942 | - | 792 | WP_231932500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271404 NZ_CP117562:3434134-3434237 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271404 NZ_CP117562:c3434239-3434007 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
