Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008065..2008297 | Replicon | chromosome |
| Accession | NZ_CP117558 | ||
| Organism | Escherichia albertii strain BIA_8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008192..2008295 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008065..2008297 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS052_RS09800 | 2004994..2005656 | - | 663 | WP_103053617.1 | exodeoxyribonuclease X | - |
| PS052_RS09805 | 2005680..2005892 | - | 213 | Protein_1916 | carbon-nitrogen hydrolase family protein YobB | - |
| PS052_RS09810 | 2006059..2006289 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS052_RS09815 | 2006428..2006805 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| PS052_RS09820 | 2006809..2007681 | + | 873 | WP_103053616.1 | copper homeostasis membrane protein CopD | - |
| PS052_RS09825 | 2007694..2008035 | + | 342 | WP_072249985.1 | YebY family protein | - |
| - | 2008065..2008297 | - | 233 | - | - | Antitoxin |
| - | 2008192..2008295 | + | 104 | - | - | Toxin |
| PS052_RS09830 | 2008905..2009483 | + | 579 | WP_059227266.1 | bfpT-regulated chaperone | - |
| PS052_RS09835 | 2009940..2010104 | + | 165 | WP_158649889.1 | hypothetical protein | - |
| PS052_RS09840 | 2010678..2010998 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| PS052_RS09845 | 2011071..2012528 | + | 1458 | WP_103053613.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2001913..2016963 | 15050 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271368 NZ_CP117558:2008192-2008295 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271368 NZ_CP117558:c2008297-2008065 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCACGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCACGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
