Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2855675..2855907 | Replicon | chromosome |
| Accession | NZ_CP117556 | ||
| Organism | Escherichia albertii strain BIA_89-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2855677..2855780 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2855675..2855907 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS032_RS14330 | 2850970..2851761 | + | 792 | WP_244614511.1 | hypothetical protein | - |
| PS032_RS14335 | 2852082..2853539 | - | 1458 | WP_137649767.1 | Trk system potassium transporter TrkG | - |
| PS032_RS14340 | 2853612..2853932 | - | 321 | WP_000086028.1 | hypothetical protein | - |
| - | 2855675..2855907 | + | 233 | - | - | Antitoxin |
| - | 2855677..2855780 | - | 104 | - | - | Toxin |
| PS032_RS14345 | 2855937..2856278 | - | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| PS032_RS14350 | 2856291..2857163 | - | 873 | WP_137649719.1 | copper homeostasis membrane protein CopD | - |
| PS032_RS14355 | 2857167..2857544 | - | 378 | WP_137649720.1 | CopC domain-containing protein YobA | - |
| PS032_RS14360 | 2857683..2857913 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS032_RS14365 | 2858078..2858290 | + | 213 | Protein_2819 | carbon-nitrogen hydrolase family protein YobB | - |
| PS032_RS14370 | 2858314..2858975 | + | 662 | Protein_2820 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 2843179..2876688 | 33509 | |
| - | inside | Prophage | - | espJ | 2830175..2876688 | 46513 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T271347 NZ_CP117556:c2855780-2855677 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271347 NZ_CP117556:2855675-2855907 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGACCACCGTCTTAAATGTTAGAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGACCACCGTCTTAAATGTTAGAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
