Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Acetyltransf_4(toxin)
Location 1925481..1926989 Replicon chromosome
Accession NZ_CP117527
Organism Pseudomonas aeruginosa strain MF1

Toxin (Protein)


Gene name - Uniprot ID Q9HYX1
Locus tag PSP57_RS08820 Protein ID WP_003119682.1
Coordinates 1925481..1926068 (+) Length 196 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID A0A9E8LAI1
Locus tag PSP57_RS08825 Protein ID WP_003117606.1
Coordinates 1926135..1926989 (+) Length 285 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PSP57_RS08815 (PSP57_08815) 1921736..1925215 - 3480 WP_003091610.1 PAS domain-containing hybrid sensor histidine kinase/response regulator -
PSP57_RS08820 (PSP57_08820) 1925481..1926068 + 588 WP_003119682.1 GNAT family protein Toxin
PSP57_RS08825 (PSP57_08825) 1926135..1926989 + 855 WP_003117606.1 AraC family transcriptional regulator Antitoxin
PSP57_RS08830 (PSP57_08830) 1927086..1929251 + 2166 WP_003091606.1 TonB-dependent receptor family protein -
PSP57_RS08835 (PSP57_08835) 1929426..1931300 + 1875 WP_003117607.1 MFS transporter -
PSP57_RS08840 (PSP57_08840) 1931361..1931570 - 210 WP_003091604.1 cold-shock protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(20-152)

Antitoxin

AraC-type arabinose-binding/dimerisation domain

(19-151)


Sequences

Toxin        


Download         Length: 196 a.a.        Molecular weight: 21901.23 Da        Isoelectric Point: 9.8676

>T271317 WP_003119682.1 NZ_CP117527:1925481-1926068 [Pseudomonas aeruginosa]
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQLV
GTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRN
HRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG

Download         Length: 588 bp

Antitoxin


Download         Length: 285 a.a.        Molecular weight: 31863.14 Da        Isoelectric Point: 7.5295

>AT271317 WP_003117606.1 NZ_CP117527:1926135-1926989 [Pseudomonas aeruginosa]
VPDETSGEHTHFWRAAELGGVELLHARYVEQRFAPHVHSSFALVIIEQGAQRFRHRGGEHLAPLGSMVLINPDEVHTGSK
AHDAGWLYRGYYPEMEQIDGILDELEIHHGGVPRFADSVIHDQPLARAFVHLHRLLAEHAGSLETQTRWRETVLALFRRH
ARLPEAPKAGQEPLAVARARELLAARLLDPPSLEELAAAVNLSPFHFARVFRRATGMPPHAWLRQRRLEQARALLKSGRA
PLEVALELGFADQSHLGRQFKQAYGVAPGEYRSACARSSLTTYE

Download         Length: 855 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 1YRE
PDB 8GXJ

Antitoxin

Source ID Structure

References