Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1970458..1970603 | Replicon | chromosome |
| Accession | NZ_CP117481 | ||
| Organism | Klebsiella pneumoniae strain DS-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1970494..1970596 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1970458..1970603 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PPH92_RS09680 | 1965588..1967648 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| PPH92_RS09685 | 1967652..1968311 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| PPH92_RS09690 | 1968390..1968620 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PPH92_RS09695 | 1968733..1969107 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| PPH92_RS09700 | 1969111..1969980 | + | 870 | WP_156731517.1 | copper homeostasis membrane protein CopD | - |
| PPH92_RS09705 | 1969997..1970335 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1970458..1970603 | - | 146 | - | - | Antitoxin |
| - | 1970494..1970596 | + | 103 | - | - | Toxin |
| PPH92_RS09710 | 1970971..1971114 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| PPH92_RS09715 | 1971219..1972187 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| PPH92_RS09720 | 1972344..1972997 | + | 654 | WP_156731516.1 | protein-serine/threonine phosphatase | - |
| PPH92_RS09725 | 1972994..1973185 | - | 192 | WP_002911395.1 | YebW family protein | - |
| PPH92_RS09730 | 1973283..1973522 | - | 240 | WP_002911393.1 | YebV family protein | - |
| PPH92_RS09735 | 1973638..1975071 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271232 NZ_CP117481:1970494-1970596 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT271232 NZ_CP117481:c1970603-1970458 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
