Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 899470..899962 Replicon chromosome
Accession NC_017617
Organism Streptococcus suis GZ1

Toxin (Protein)


Gene name relE Uniprot ID D5AHJ6
Locus tag SSGZ1_RS04410 Protein ID WP_011922404.1
Coordinates 899470..899727 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID D5AHJ7
Locus tag SSGZ1_RS04415 Protein ID WP_012775104.1
Coordinates 899711..899962 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SSGZ1_RS04390 895104..896174 + 1071 WP_012775101.1 tyrosine recombinase XerS -
SSGZ1_RS04395 896244..897752 - 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
SSGZ1_RS04400 897828..898769 - 942 WP_012775102.1 sensor histidine kinase -
SSGZ1_RS04405 898766..899431 - 666 WP_012775103.1 response regulator transcription factor -
SSGZ1_RS04410 899470..899727 - 258 WP_011922404.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
SSGZ1_RS04415 899711..899962 - 252 WP_012775104.1 hypothetical protein Antitoxin
SSGZ1_RS04420 900054..902024 - 1971 WP_012775105.1 FtsX-like permease family protein -
SSGZ1_RS04425 902025..902777 - 753 WP_014635973.1 ABC transporter ATP-binding protein -
SSGZ1_RS04430 902913..903647 - 735 WP_011922410.1 ABC transporter permease -
SSGZ1_RS04435 903649..904395 - 747 WP_011922411.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(10-75)

Antitoxin

Protein of unknown function DUF6290

(1-75)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9981.62 Da        Isoelectric Point: 10.8924

>T27110 WP_011922404.1 NC_017617:c899727-899470 [Streptococcus suis GZ1]
MKTCYKLVPTSRFIKQLKKLDKFTQKQITNYLSSHVTDNPRQYGKALTANRSGQWRYRIGNYRVIVNIEDDKLIVTSIKM
RNGSI

Download         Length: 258 bp

>T27110 NC_017617:c899727-899470 [Streptococcus suis GZ1]
ATGAAGACCTGTTATAAACTCGTACCGACCAGTCGTTTTATTAAACAGTTGAAAAAGTTGGACAAATTTACCCAAAAACA
GATTACCAACTACTTGTCCAGTCATGTGACTGACAACCCTAGACAATACGGAAAAGCCTTGACTGCTAATCGTTCTGGCC
AATGGCGCTATCGTATCGGCAATTACAGGGTTATCGTTAATATTGAAGATGATAAATTGATTGTGACAAGCATAAAAATG
AGAAATGGAAGTATATAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9325.59 Da        Isoelectric Point: 3.7666

>AT27110 WP_012775104.1 NC_017617:c899962-899711 [Streptococcus suis GZ1]
MAAITLKVSEQDKLFMQAMAKFEGVSLSELIRTKTLEALEDEYDARVADIALSEYEADLAKGIEPISWEEMLEELGLTDE
DLL

Download         Length: 252 bp

>AT27110 NC_017617:c899962-899711 [Streptococcus suis GZ1]
ATGGCAGCTATTACATTGAAAGTTTCTGAGCAGGACAAGCTCTTTATGCAGGCTATGGCAAAGTTTGAAGGTGTCAGTTT
GTCAGAACTCATTCGGACTAAAACCCTTGAAGCTCTCGAAGATGAATATGATGCCCGTGTGGCAGATATCGCTCTGTCTG
AATACGAGGCAGACTTGGCGAAAGGCATTGAGCCGATTAGCTGGGAGGAAATGTTGGAAGAGTTGGGGTTGACGGATGAA
GACCTGTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0Z8U747

Antitoxin

Source ID Structure
AlphaFold DB A0A0Z9GU89

References