Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2764923..2765068 | Replicon | chromosome |
| Accession | NZ_CP117367 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dublin strain RM079 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2764925..2765028 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2764923..2765068 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ12_RS13730 | 2761803..2762633 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQQ12_RS13735 | 2762680..2762865 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQQ12_RS13740 | 2762964..2763392 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQQ12_RS13745 | 2763453..2763731 | + | 279 | WP_001675651.1 | excisionase | - |
| PQQ12_RS13750 | 2763706..2764785 | + | 1080 | WP_000087638.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2764923..2765068 | + | 146 | - | - | Antitoxin |
| - | 2764925..2765028 | - | 104 | - | - | Toxin |
| PQQ12_RS13755 | 2765168..2765521 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQQ12_RS13760 | 2765538..2766413 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQQ12_RS13765 | 2766414..2766788 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQQ12_RS13770 | 2766926..2767156 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ12_RS13775 | 2767264..2767920 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ12_RS13780 | 2767944..2768642 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 2701908..2786938 | 85030 | |
| - | inside | Prophage | - | sopE2 / sodCI | 2713982..2786938 | 72956 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T270849 NZ_CP117367:c2765028-2764925 [Salmonella enterica subsp. enterica serovar Dublin]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT270849 NZ_CP117367:2764923-2765068 [Salmonella enterica subsp. enterica serovar Dublin]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
