Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | tacAT/DUF1778(antitoxin) |
| Location | 1024375..1025189 | Replicon | chromosome |
| Accession | NZ_CP117367 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dublin strain RM079 | ||
Toxin (Protein)
| Gene name | TacT3 | Uniprot ID | M7RPS8 |
| Locus tag | PQQ12_RS04960 | Protein ID | WP_000971649.1 |
| Coordinates | 1024375..1024902 (-) | Length | 176 a.a. |
Antitoxin (Protein)
| Gene name | TacA3 | Uniprot ID | M7S6I2 |
| Locus tag | PQQ12_RS04965 | Protein ID | WP_000855694.1 |
| Coordinates | 1024899..1025189 (-) | Length | 97 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ12_RS04930 (1020658) | 1020658..1021056 | + | 399 | Protein_965 | cytoplasmic protein | - |
| PQQ12_RS04935 (1021247) | 1021247..1021486 | + | 240 | Protein_966 | hypothetical protein | - |
| PQQ12_RS04940 (1021643) | 1021643..1022311 | + | 669 | WP_000445914.1 | hypothetical protein | - |
| PQQ12_RS04945 (1022338) | 1022338..1022832 | + | 495 | WP_000424948.1 | hypothetical protein | - |
| PQQ12_RS04950 (1023004) | 1023004..1023660 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| PQQ12_RS04955 (1023893) | 1023893..1024302 | + | 410 | Protein_970 | IS5/IS1182 family transposase | - |
| PQQ12_RS04960 (1024375) | 1024375..1024902 | - | 528 | WP_000971649.1 | GNAT family N-acetyltransferase | Toxin |
| PQQ12_RS04965 (1024899) | 1024899..1025189 | - | 291 | WP_000855694.1 | DUF1778 domain-containing protein | Antitoxin |
| PQQ12_RS04970 (1025459) | 1025459..1025637 | - | 179 | Protein_973 | IS3 family transposase | - |
| PQQ12_RS04975 (1026041) | 1026041..1026484 | - | 444 | WP_000715096.1 | SPI-1 type III secretion system invasion lipoprotein InvH | - |
| PQQ12_RS04980 (1026940) | 1026940..1027590 | + | 651 | WP_001674874.1 | type III secretion system transcriptional activator InvF | - |
| PQQ12_RS04985 (1027587) | 1027587..1029275 | + | 1689 | WP_000848113.1 | type III secretion system outer membrane ring protein InvG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1024162..1024302 | 140 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 176 a.a. Molecular weight: 19026.88 Da Isoelectric Point: 9.3905
>T270848 WP_000971649.1 NZ_CP117367:c1024902-1024375 [Salmonella enterica subsp. enterica serovar Dublin]
MMFTDWHEAAIGKTHNRMNFDCGDADLNQFLQRHALQNHEKGTTKTYVALDNSDVTRIHGFYSVSPASLIYAQVPGAISK
GLGRYDVPVFRLGRLAVDKSMQGQGLGAQLLLSAGKRCIQAALQVGGVALLIDAKNKQVCDWYKGFGAVPLNDQPLSLLL
SFKTLYAALSASGRL
MMFTDWHEAAIGKTHNRMNFDCGDADLNQFLQRHALQNHEKGTTKTYVALDNSDVTRIHGFYSVSPASLIYAQVPGAISK
GLGRYDVPVFRLGRLAVDKSMQGQGLGAQLLLSAGKRCIQAALQVGGVALLIDAKNKQVCDWYKGFGAVPLNDQPLSLLL
SFKTLYAALSASGRL
Download Length: 528 bp
Antitoxin
Download Length: 97 a.a. Molecular weight: 10664.50 Da Isoelectric Point: 6.3133
>AT270848 WP_000855694.1 NZ_CP117367:c1025189-1024899 [Salmonella enterica subsp. enterica serovar Dublin]
MKTMPQIAIESNERLSLRVSTDAKKLIVRAAAIQQTNLTDFVVSNVLPVAQKIVDAAERVYLTERDTQMIMEILDNPPAP
NEKLLAAAFALPDMKK
MKTMPQIAIESNERLSLRVSTDAKKLIVRAAAIQQTNLTDFVVSNVLPVAQKIVDAAERVYLTERDTQMIMEILDNPPAP
NEKLLAAAFALPDMKK
Download Length: 291 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3V5VVF5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3V8SJE7 |