Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | ygfYX/Cpta(toxin) |
Location | 1477404..1478046 | Replicon | chromosome |
Accession | NC_017579 | ||
Organism | Shewanella baltica OS117 |
Toxin (Protein)
Gene name | ygfX | Uniprot ID | A3D1U8 |
Locus tag | SBAL117_RS06480 | Protein ID | WP_011846165.1 |
Coordinates | 1477633..1478046 (+) | Length | 138 a.a. |
Antitoxin (Protein)
Gene name | ygfY | Uniprot ID | - |
Locus tag | SBAL117_RS06475 | Protein ID | WP_006080770.1 |
Coordinates | 1477404..1477652 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SBAL117_RS06450 | 1473060..1473869 | + | 810 | WP_011846160.1 | prolipoprotein diacylglyceryl transferase | - |
SBAL117_RS06455 | 1473866..1474660 | + | 795 | WP_011846161.1 | thymidylate synthase | - |
SBAL117_RS06460 | 1474778..1475947 | + | 1170 | WP_011846162.1 | Na+/H+ antiporter NhaA | - |
SBAL117_RS06465 | 1475950..1476336 | + | 387 | WP_006080768.1 | hypothetical protein | - |
SBAL117_RS06470 | 1476410..1477318 | + | 909 | WP_006085064.1 | transcriptional activator NhaR | - |
SBAL117_RS06475 | 1477404..1477652 | + | 249 | WP_006080770.1 | succinate dehydrogenase assembly factor 2 | Antitoxin |
SBAL117_RS06480 | 1477633..1478046 | + | 414 | WP_011846165.1 | hypothetical protein | Toxin |
SBAL117_RS06485 | 1478133..1479746 | - | 1614 | WP_006080772.1 | L-aspartate oxidase | - |
SBAL117_RS06490 | 1479937..1480515 | + | 579 | WP_006080773.1 | RNA polymerase sigma factor RpoE | - |
SBAL117_RS06495 | 1480557..1481183 | + | 627 | WP_011846166.1 | anti-sigma factor | - |
SBAL117_RS06500 | 1481196..1482128 | + | 933 | WP_011846167.1 | MucB/RseB C-terminal domain-containing protein | - |
SBAL117_RS06505 | 1482139..1482612 | + | 474 | WP_011846168.1 | SoxR reducing system RseC family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 138 a.a. Molecular weight: 16265.22 Da Isoelectric Point: 7.6686
>T27071 WP_011846165.1 NC_017579:1477633-1478046 [Shewanella baltica OS117]
VEDRHHSFSVKASFDQRLSLVVFICVCSSSFLLWPQSDNLAISLLKYLFILLVCVFLLSQMWRLQYWRLDFVLSDKGEGR
LSTGEHFQVLKRTWVTPFVCLMYIEVDTQLRLLMVWADMLDDTDYRHLCRLLLRAKI
VEDRHHSFSVKASFDQRLSLVVFICVCSSSFLLWPQSDNLAISLLKYLFILLVCVFLLSQMWRLQYWRLDFVLSDKGEGR
LSTGEHFQVLKRTWVTPFVCLMYIEVDTQLRLLMVWADMLDDTDYRHLCRLLLRAKI
Download Length: 414 bp
>T27071 NC_017579:1477633-1478046 [Shewanella baltica OS117]
GTGGAAGACCGGCACCATAGTTTCAGCGTAAAAGCCTCCTTCGACCAACGACTCTCGTTGGTCGTTTTTATTTGTGTCTG
TTCTAGCTCATTTCTGCTCTGGCCTCAAAGCGATAATCTCGCCATATCCCTGCTTAAATATCTGTTTATCCTGCTAGTTT
GTGTTTTCTTGCTATCACAGATGTGGCGACTGCAGTATTGGCGTTTAGATTTTGTGCTTAGTGATAAAGGCGAGGGACGT
TTGTCAACGGGTGAGCACTTTCAGGTATTAAAGCGAACTTGGGTGACACCCTTTGTTTGCTTGATGTATATCGAAGTGGA
TACTCAGTTGCGGCTCTTGATGGTTTGGGCGGATATGCTAGACGATACTGACTATCGGCATTTATGTCGGCTGTTGCTGC
GGGCTAAAATATAA
GTGGAAGACCGGCACCATAGTTTCAGCGTAAAAGCCTCCTTCGACCAACGACTCTCGTTGGTCGTTTTTATTTGTGTCTG
TTCTAGCTCATTTCTGCTCTGGCCTCAAAGCGATAATCTCGCCATATCCCTGCTTAAATATCTGTTTATCCTGCTAGTTT
GTGTTTTCTTGCTATCACAGATGTGGCGACTGCAGTATTGGCGTTTAGATTTTGTGCTTAGTGATAAAGGCGAGGGACGT
TTGTCAACGGGTGAGCACTTTCAGGTATTAAAGCGAACTTGGGTGACACCCTTTGTTTGCTTGATGTATATCGAAGTGGA
TACTCAGTTGCGGCTCTTGATGGTTTGGGCGGATATGCTAGACGATACTGACTATCGGCATTTATGTCGGCTGTTGCTGC
GGGCTAAAATATAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9723.36 Da Isoelectric Point: 4.4929
>AT27071 WP_006080770.1 NC_017579:1477404-1477652 [Shewanella baltica OS117]
MELMNIARVRWACRRGMLELDVLFQPFVENFYQEMSDEDKTVFIRLLECEDPELFAWFMGHEVCPDAELARMVVKVRGRP
AP
MELMNIARVRWACRRGMLELDVLFQPFVENFYQEMSDEDKTVFIRLLECEDPELFAWFMGHEVCPDAELARMVVKVRGRP
AP
Download Length: 249 bp
>AT27071 NC_017579:1477404-1477652 [Shewanella baltica OS117]
TTGGAATTAATGAACATCGCAAGGGTTCGCTGGGCATGTCGCCGCGGGATGCTGGAATTAGACGTTTTGTTTCAACCTTT
TGTTGAAAATTTCTATCAAGAAATGTCCGATGAAGATAAAACCGTGTTTATCCGTTTGTTGGAATGTGAAGATCCCGAAT
TGTTTGCTTGGTTTATGGGCCATGAAGTGTGCCCTGATGCTGAGCTTGCGCGCATGGTAGTGAAAGTCCGTGGAAGACCG
GCACCATAG
TTGGAATTAATGAACATCGCAAGGGTTCGCTGGGCATGTCGCCGCGGGATGCTGGAATTAGACGTTTTGTTTCAACCTTT
TGTTGAAAATTTCTATCAAGAAATGTCCGATGAAGATAAAACCGTGTTTATCCGTTTGTTGGAATGTGAAGATCCCGAAT
TGTTTGCTTGGTTTATGGGCCATGAAGTGTGCCCTGATGCTGAGCTTGCGCGCATGGTAGTGAAAGTCCGTGGAAGACCG
GCACCATAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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