Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YafQ-DinJ |
Location | 295504..296055 | Replicon | |
Accession | NC_017576 | ||
Organism | Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 |
Toxin (Protein)
Gene name | relE | Uniprot ID | F5WYT2 |
Locus tag | SGGB_RS01675 | Protein ID | WP_014619942.1 |
Coordinates | 295504..295782 (-) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | T1ZGU4 |
Locus tag | SGGB_RS01680 | Protein ID | WP_014619943.1 |
Coordinates | 295783..296055 (-) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SGGB_RS01640 | 290570..290956 | - | 387 | WP_043910750.1 | hypothetical protein | - |
SGGB_RS01645 | 290934..292166 | - | 1233 | WP_014619938.1 | replication initiation factor domain-containing protein | - |
SGGB_RS01650 | 292379..294046 | - | 1668 | WP_014619939.1 | cell division protein FtsK | - |
SGGB_RS01655 | 294053..294463 | - | 411 | WP_014619940.1 | DUF961 family protein | - |
SGGB_RS01660 | 294486..294800 | - | 315 | WP_000406626.1 | hypothetical protein | - |
SGGB_RS01670 | 295139..295375 | - | 237 | WP_014619941.1 | hypothetical protein | - |
SGGB_RS01675 | 295504..295782 | - | 279 | WP_014619942.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
SGGB_RS01680 | 295783..296055 | - | 273 | WP_014619943.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
SGGB_RS01685 | 296283..296750 | + | 468 | WP_014619944.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
SGGB_RS01690 | 297385..297747 | + | 363 | WP_008809667.1 | helix-turn-helix transcriptional regulator | - |
SGGB_RS01695 | 297754..298605 | + | 852 | WP_014619945.1 | ImmA/IrrE family metallo-endopeptidase | - |
SGGB_RS01705 | 299242..299928 | + | 687 | Protein_300 | NTPase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | - | 273149..300656 | 27507 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10893.81 Da Isoelectric Point: 9.3997
>T27060 WP_014619942.1 NC_017576:c295782-295504 [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MYQVKFTSAFKKSYKRIKKRGLEMALLDEVIEKLRLGQTLEEKYRDHKLKGNFVGFRECHIKPDWLLIYLIEDDILTLTL
ADTGSHADLFKM
MYQVKFTSAFKKSYKRIKKRGLEMALLDEVIEKLRLGQTLEEKYRDHKLKGNFVGFRECHIKPDWLLIYLIEDDILTLTL
ADTGSHADLFKM
Download Length: 279 bp
>T27060 NC_017576:c295782-295504 [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGTACCAAGTCAAGTTCACCTCTGCTTTTAAAAAGAGCTATAAACGGATTAAAAAGCGAGGTTTAGAGATGGCACTCTT
AGATGAAGTGATTGAAAAACTCCGTCTAGGTCAGACACTAGAAGAAAAATACCGTGACCATAAACTCAAAGGAAACTTTG
TTGGCTTTAGGGAATGTCACATCAAGCCAGATTGGCTCTTGATTTATCTGATTGAAGACGATATTTTGACTTTAACCTTA
GCCGACACGGGCAGTCATGCGGATTTGTTTAAGATGTGA
ATGTACCAAGTCAAGTTCACCTCTGCTTTTAAAAAGAGCTATAAACGGATTAAAAAGCGAGGTTTAGAGATGGCACTCTT
AGATGAAGTGATTGAAAAACTCCGTCTAGGTCAGACACTAGAAGAAAAATACCGTGACCATAAACTCAAAGGAAACTTTG
TTGGCTTTAGGGAATGTCACATCAAGCCAGATTGGCTCTTGATTTATCTGATTGAAGACGATATTTTGACTTTAACCTTA
GCCGACACGGGCAGTCATGCGGATTTGTTTAAGATGTGA
Antitoxin
Download Length: 91 a.a. Molecular weight: 9905.35 Da Isoelectric Point: 4.7085
>AT27060 WP_014619943.1 NC_017576:c296055-295783 [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MATVPTQIRIDETVKAQATSLFNDLGMDMSSAVNIFLRQCLLRGGLPFTVELPNYSQKTLEALAEAKRISRDETVASYDN
LADLKKALDA
MATVPTQIRIDETVKAQATSLFNDLGMDMSSAVNIFLRQCLLRGGLPFTVELPNYSQKTLEALAEAKRISRDETVASYDN
LADLKKALDA
Download Length: 273 bp
>AT27060 NC_017576:c296055-295783 [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGGCAACTGTACCAACTCAAATTCGGATTGATGAAACTGTAAAAGCCCAAGCAACTTCATTATTTAATGACTTGGGGAT
GGATATGTCTAGTGCAGTCAATATTTTTCTTCGTCAATGTCTATTGCGTGGTGGGCTTCCTTTCACGGTTGAACTTCCCA
ATTATAGTCAAAAGACCTTAGAAGCTCTGGCAGAAGCTAAGCGTATTTCTCGTGATGAAACGGTTGCTTCTTATGACAAT
CTAGCAGATTTAAAGAAGGCTCTGGACGCTTAG
ATGGCAACTGTACCAACTCAAATTCGGATTGATGAAACTGTAAAAGCCCAAGCAACTTCATTATTTAATGACTTGGGGAT
GGATATGTCTAGTGCAGTCAATATTTTTCTTCGTCAATGTCTATTGCGTGGTGGGCTTCCTTTCACGGTTGAACTTCCCA
ATTATAGTCAAAAGACCTTAGAAGCTCTGGCAGAAGCTAAGCGTATTTCTCGTGATGAAACGGTTGCTTCTTATGACAAT
CTAGCAGATTTAAAGAAGGCTCTGGACGCTTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | F5WYT2 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3R9JSK3 |