Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 928930..929517 Replicon chromosome
Accession NZ_CP117267
Organism Rhizobium rhododendri strain rho-6.2

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag PR018_RS04635 Protein ID WP_142829519.1
Coordinates 929227..929517 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PR018_RS04630 Protein ID WP_142829521.1
Coordinates 928930..929226 (-) Length 99 a.a.

Genomic Context

PR018_RS04610PR018_RS04655PR018_RS04660PR018_RS04665PR018_RS04615PR018_RS04620PR018_RS04625PR018_RS04630PR018_RS04635PR018_RS04640PR018_RS04645PR018_RS04650
Location: 924894..925847 (954 bp)
Type: Others
Protein ID: WP_224128276.1
Location: 931609..932040 (432 bp)
Type: Others
Protein ID: WP_142829516.1
Location: 932159..933442 (1284 bp)
Type: Others
Protein ID: WP_142829514.1
Location: 933569..933913 (345 bp)
Type: Others
Protein ID: WP_142829512.1
Location: 925893..926684 (792 bp)
Type: Others
Protein ID: WP_142829526.1
Location: 926707..927639 (933 bp)
Type: Others
Protein ID: WP_142829524.1
Location: 927722..928675 (954 bp)
Type: Others
Protein ID: WP_142829522.1
Location: 928930..929226 (297 bp)
Type: Antitoxin
Protein ID: WP_142829521.1
Location: 929227..929517 (291 bp)
Type: Toxin
Protein ID: WP_142829519.1
Location: 929642..930112 (471 bp)
Type: Others
Protein ID: WP_111220548.1
Location: 930115..930579 (465 bp)
Type: Others
Protein ID: WP_111220549.1
Location: 931173..931499 (327 bp)
Type: Others
Protein ID: WP_142829518.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PR018_RS04610 (PR018_04610)924894..925847+954WP_224128276.1murein L,D-transpeptidase catalytic domain family protein-
PR018_RS04615 (PR018_04615)925893..926684-792WP_142829526.1sulfite exporter TauE/SafE family protein-
PR018_RS04620 (PR018_04620)926707..927639-933WP_142829524.1N-acetyl-gamma-glutamyl-phosphate reductase-
PR018_RS04625 (PR018_04625)927722..928675-954WP_142829522.1agmatinase-
PR018_RS04630 (PR018_04630)928930..929226-297WP_142829521.1putative addiction module antidote proteinAntitoxin
PR018_RS04635 (PR018_04635)929227..929517-291WP_142829519.1type II toxin-antitoxin system RelE/ParE family toxinToxin
PR018_RS04640 (PR018_04640)929642..930112-471WP_111220548.130S ribosomal protein S9-
PR018_RS04645 (PR018_04645)930115..930579-465WP_111220549.150S ribosomal protein L13-
PR018_RS04650 (PR018_04650)931173..931499-327WP_142829518.1hypothetical protein-
PR018_RS04655 (PR018_04655)931609..932040+432WP_142829516.1CoA-binding protein-
PR018_RS04660 (PR018_04660)932159..933442+1284WP_142829514.1O-acetylhomoserine aminocarboxypropyltransferase-
PR018_RS04665 (PR018_04665)933569..933913+345WP_142829512.1cupin domain-containing protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-92)

Antitoxin

Uncharacterized protein HI1420

(5-91)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10727.40 Da        Isoelectric Point: 10.2980

>T270217 WP_142829519.1 NZ_CP117267:c929517-929227 [Rhizobium rhododendri]
VIEVRQTSIFANWLDALRDAQARQRIVVRIRRLELGNPGDIKPVGEGVSEMRIPHGPGYRLYFTRSGETIVILLCGGDKS
SQARDIAIARQLAKEI

Download         Length: 291 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 10396.79 Da        Isoelectric Point: 4.4079

>AT270217 WP_142829521.1 NZ_CP117267:c929226-928930 [Rhizobium rhododendri]
MPLETTRFDIQDHLTTPADRMLYLEAAFEDGDPALITQALGDVARAAGMTSVAKEAGVTREALYKSLSEAGDPRLSTFLG
VIKALGLKVSISTDQNAA

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References