Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/HTH_26(antitoxin)
Location 566746..567360 Replicon chromosome
Accession NZ_CP117267
Organism Rhizobium rhododendri strain rho-6.2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PR018_RS02775 Protein ID WP_142824284.1
Coordinates 566746..566991 (+) Length 82 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PR018_RS02780 Protein ID WP_142824285.1
Coordinates 566998..567360 (+) Length 121 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PR018_RS02755 (PR018_02755) 562787..563062 + 276 WP_142824280.1 YlcI/YnfO family protein -
PR018_RS02760 (PR018_02760) 563059..563358 + 300 WP_142824281.1 type II toxin-antitoxin system RelE/ParE family toxin -
PR018_RS02765 (PR018_02765) 563914..564972 + 1059 WP_142824282.1 LacI family DNA-binding transcriptional regulator -
PR018_RS02770 (PR018_02770) 565000..566652 - 1653 WP_142824283.1 choline dehydrogenase -
PR018_RS02775 (PR018_02775) 566746..566991 + 246 WP_142824284.1 cytotoxic translational repressor of toxin-antitoxin stability system Toxin
PR018_RS02780 (PR018_02780) 566998..567360 + 363 WP_142824285.1 helix-turn-helix transcriptional regulator Antitoxin
PR018_RS02785 (PR018_02785) 567372..568835 - 1464 WP_142824286.1 betaine-aldehyde dehydrogenase -
PR018_RS02790 (PR018_02790) 568837..570366 - 1530 WP_142824287.1 choline-sulfatase -
PR018_RS02795 (PR018_02795) 570372..570962 - 591 WP_142824288.1 transcriptional regulator BetI -
PR018_RS02800 (PR018_02800) 571132..571680 + 549 WP_142829209.1 HdeD family acid-resistance protein -
PR018_RS02805 (PR018_02805) 571873..572127 + 255 WP_142824290.1 type II toxin-antitoxin system ParD family antitoxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(67-114)


Sequences

Toxin        


Download         Length: 82 a.a.        Molecular weight: 9194.07 Da        Isoelectric Point: 10.9851

>T270216 WP_142824284.1 NZ_CP117267:566746-566991 [Rhizobium rhododendri]
MKDVVVSRLADKALMRMQPKRRLAIIEKVKAYARGEIVDIKKMKGGNLYRIRVGLDRVIIDDKGRIIVVIDAGPRGSIYK
D

Download         Length: 246 bp

Antitoxin


Download         Length: 121 a.a.        Molecular weight: 13084.87 Da        Isoelectric Point: 4.2616

>AT270216 WP_142824285.1 NZ_CP117267:566998-567360 [Rhizobium rhododendri]
MGDIKRFEIDGKPYVLLSEEDYEDLVDGLRANAVLAGISAGEETWPLEIVEARANGGNAVRIFRNYRRMTVTELAMAAGI
SQPYLSEIEAGKKTGSVDVLKRIATALKVDLDDLVVDVAD

Download         Length: 363 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References