270206

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 500997..501477 Replicon chromosome
Accession NZ_CP117261
Organism Rhizobium tumorigenes strain 932

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag PR016_RS02465 Protein ID WP_278331438.1
Coordinates 501205..501477 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag PR016_RS02460 Protein ID WP_209187348.1
Coordinates 500997..501221 (+) Length 75 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PR016_RS02425 (PR016_02425) 496215..496562 - 348 WP_278331435.1 DUF86 domain-containing protein -
PR016_RS02430 (PR016_02430) 496563..496859 - 297 WP_142824229.1 nucleotidyltransferase domain-containing protein -
PR016_RS02435 (PR016_02435) 497005..498138 + 1134 WP_111217837.1 site-specific DNA-methyltransferase -
PR016_RS02440 (PR016_02440) 498253..498618 - 366 WP_111217840.1 nuclear transport factor 2 family protein -
PR016_RS02445 (PR016_02445) 498623..499237 - 615 WP_278331436.1 HAD family phosphatase -
PR016_RS02450 (PR016_02450) 499254..500333 - 1080 WP_278332615.1 A/G-specific adenine glycosylase -
PR016_RS02455 (PR016_02455) 500433..500933 + 501 WP_278331437.1 DUF721 domain-containing protein -
PR016_RS02460 (PR016_02460) 500997..501221 + 225 WP_209187348.1 DUF6290 family protein Antitoxin
PR016_RS02465 (PR016_02465) 501205..501477 + 273 WP_278331438.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PR016_RS02470 (PR016_02470) 501689..502384 + 696 WP_209183045.1 DsbA family protein -
PR016_RS02475 (PR016_02475) 502775..506233 + 3459 WP_278331439.1 chromosome segregation SMC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-88)

Antitoxin

Relaxosome protein TraY

(4-49)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10793.42 Da        Isoelectric Point: 10.5936

>T270206 WP_278331438.1 NZ_CP117261:501205-501477 [Rhizobium tumorigenes]
MAWRIEFQRPAERDLEKLDHESVKRILRFLHTRVASLEDPRAIGEALRGSELGNFWKYRVRDYRIIADIDDGTVRILVVR
IGNRKDVYRR

Download         Length: 273 bp

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 8542.61 Da        Isoelectric Point: 4.5355

>AT270206 WP_209187348.1 NZ_CP117261:500997-501221 [Rhizobium tumorigenes]
MLALRLPPDIEARLDELAKRTGRSKSFYARQAILEHLDDLEDLYVAEQRLEEFRRGDSDSISLAELMARHGVED

Download         Length: 225 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References