Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 2075872..2076364 Replicon chromosome
Accession NZ_CP117255
Organism Rhizobium tumorigenes strain 1078

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag PR017_RS10255 Protein ID WP_111222666.1
Coordinates 2076101..2076364 (-) Length 88 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag PR017_RS10250 Protein ID WP_111222667.1
Coordinates 2075872..2076114 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PR017_RS10230 (PR017_10230) 2071124..2072032 + 909 WP_111222671.1 metallophosphoesterase -
PR017_RS10235 (PR017_10235) 2072349..2072861 + 513 WP_111222670.1 RNA polymerase sigma factor -
PR017_RS10240 (PR017_10240) 2072864..2073694 + 831 WP_164498266.1 anti-sigma factor -
PR017_RS10245 (PR017_10245) 2073774..2075516 - 1743 WP_111222668.1 2-isopropylmalate synthase -
PR017_RS10250 (PR017_10250) 2075872..2076114 - 243 WP_111222667.1 CopG family transcriptional regulator Antitoxin
PR017_RS10255 (PR017_10255) 2076101..2076364 - 264 WP_111222666.1 BrnT family toxin Toxin
PR017_RS10260 (PR017_10260) 2076401..2077591 - 1191 WP_111222665.1 benzoate/H(+) symporter BenE family transporter -
PR017_RS10265 (PR017_10265) 2077691..2078425 - 735 WP_111222664.1 class I SAM-dependent methyltransferase -
PR017_RS10270 (PR017_10270) 2078519..2079103 - 585 WP_111222663.1 ATP-dependent Clp protease proteolytic subunit -
PR017_RS10275 (PR017_10275) 2079322..2080137 + 816 WP_111222662.1 DUF2076 domain-containing protein -
PR017_RS10280 (PR017_10280) 2080201..2080665 - 465 WP_111222661.1 preQ(1) synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10225.74 Da        Isoelectric Point: 10.2670

>T270194 WP_111222666.1 NZ_CP117255:c2076364-2076101 [Rhizobium tumorigenes]
MAFEFDPDKSRTNKIKHGIDLVEAQRLWIDRFLISFPARDGLESRFVAIGQIDGKHWSAICTRRHDNIRIISVRRSRKEE
IALYEGK

Download         Length: 264 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8987.04 Da        Isoelectric Point: 4.3193

>AT270194 WP_111222667.1 NZ_CP117255:c2076114-2075872 [Rhizobium tumorigenes]
MKASELDEKFDNGEDILDYLDLTKATRPNMATQKVSVDFATSVVNSLDEEAARVGLTRQSLINLWIEERLSAAQDQRKVS

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References