Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 132406..132988 Replicon chromosome
Accession NZ_CP117199
Organism Pantoea sp. SS70

Toxin (Protein)


Gene name shpA Uniprot ID -
Locus tag PO881_RS00600 Protein ID WP_280172294.1
Coordinates 132406..132699 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID -
Locus tag PO881_RS00605 Protein ID WP_110867899.1
Coordinates 132686..132988 (+) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PO881_RS00590 (PO881_00590) 130769..131215 + 447 WP_110867897.1 cellulose biosynthesis protein BcsD -
PO881_RS00595 (PO881_00595) 131225..132229 + 1005 WP_280172293.1 glycosyl hydrolase family 8 -
PO881_RS00600 (PO881_00600) 132406..132699 + 294 WP_280172294.1 BrnT family toxin Toxin
PO881_RS00605 (PO881_00605) 132686..132988 + 303 WP_110867899.1 BrnA antitoxin family protein Antitoxin
PO881_RS00610 (PO881_00610) 133016..136405 - 3390 WP_280172295.1 cellulose synthase complex outer membrane protein BcsC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(9-90)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(41-93)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11496.89 Da        Isoelectric Point: 6.9794

>T270065 WP_280172294.1 NZ_CP117199:132406-132699 [Pantoea sp. SS70]
MQTELEFEWDLSKAESNHRKHGIRFEIAVRVFDDPFHLSSQDRCENGEYRWQSIGNVMGHIIILVAHTVRFDQGTEIIRI
ISARPATRNERRRYEQG

Download         Length: 294 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11393.03 Da        Isoelectric Point: 9.6841

>AT270065 WP_110867899.1 NZ_CP117199:132686-132988 [Pantoea sp. SS70]
MSKVRFKRSELPPLSDSLQSELDALSQKPDSEIDCGEIAPLNERFWNRASSGRFYRPIKTQASVRIDADVLEWLKAPGKG
YQTRLNAILRAAMLRELESK

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References