Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3762158..3762301 | Replicon | chromosome |
| Accession | NZ_CP117181 | ||
| Organism | Salmonella enterica subsp. enterica serovar Mbandaka strain SM_F28S | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3762196..3762299 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3762158..3762301 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP75_RS18150 | 3758581..3759279 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PQP75_RS18155 | 3759303..3759959 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQP75_RS18160 | 3760067..3760297 | - | 231 | WP_017441952.1 | DNA polymerase III subunit theta | - |
| PQP75_RS18165 | 3760435..3760809 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| PQP75_RS18170 | 3760810..3761685 | + | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| PQP75_RS18175 | 3761702..3762055 | + | 354 | WP_017441954.1 | YebY family protein | - |
| - | 3762158..3762301 | - | 144 | - | - | Antitoxin |
| - | 3762196..3762299 | + | 104 | - | - | Toxin |
| PQP75_RS18180 | 3762420..3762767 | - | 348 | Protein_3530 | tyrosine-type recombinase/integrase | - |
| PQP75_RS18185 | 3762779..3762862 | + | 84 | Protein_3531 | phage tail protein | - |
| PQP75_RS18190 | 3763036..3765456 | + | 2421 | WP_024149295.1 | type III secretion system effector SspH3 | - |
| PQP75_RS18195 | 3765598..3766126 | + | 529 | Protein_3533 | transposase | - |
| PQP75_RS18200 | 3766272..3766412 | - | 141 | WP_031615664.1 | hypothetical protein | - |
| PQP75_RS18205 | 3766578..3766847 | - | 270 | WP_077907250.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 3765788..3766126 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T270031 NZ_CP117181:3762196-3762299 [Salmonella enterica subsp. enterica serovar Mbandaka]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT270031 NZ_CP117181:c3762301-3762158 [Salmonella enterica subsp. enterica serovar Mbandaka]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAAGTTTTCCAGTTTG
