Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2237988..2238112 | Replicon | chromosome |
| Accession | NZ_CP117168 | ||
| Organism | Serratia proteamaculans strain CD3406 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2238010..2238106 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2237988..2238112 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JET59_RS10620 (JET59_010620) | 2233164..2233589 | + | 426 | WP_219015924.1 | TraR/DksA C4-type zinc finger protein | - |
| JET59_RS10625 (JET59_010625) | 2233762..2234715 | + | 954 | WP_219015925.1 | prolyl aminopeptidase | - |
| JET59_RS10630 (JET59_010630) | 2234746..2234976 | - | 231 | WP_085116270.1 | DNA polymerase III subunit theta | - |
| JET59_RS10635 (JET59_010635) | 2235349..2235867 | + | 519 | WP_099062464.1 | non-heme ferritin | - |
| JET59_RS10640 (JET59_010640) | 2236189..2236572 | + | 384 | WP_037420313.1 | CopC domain-containing protein YobA | - |
| JET59_RS10645 (JET59_010645) | 2236576..2237457 | + | 882 | WP_219015926.1 | copper homeostasis membrane protein CopD | - |
| JET59_RS10650 (JET59_010650) | 2237527..2237868 | + | 342 | WP_219015927.1 | YebY family protein | - |
| - | 2237988..2238112 | - | 125 | - | - | Antitoxin |
| - | 2238010..2238106 | + | 97 | - | - | Toxin |
| JET59_RS10655 (JET59_010655) | 2238855..2239310 | + | 456 | WP_099062396.1 | hypothetical protein | - |
| JET59_RS10660 (JET59_010660) | 2239388..2239924 | - | 537 | WP_237520823.1 | DUF4136 domain-containing protein | - |
| JET59_RS10665 (JET59_010665) | 2240367..2240717 | + | 351 | WP_099062394.1 | DUF4377 domain-containing protein | - |
| JET59_RS10670 (JET59_010670) | 2240936..2242135 | + | 1200 | WP_085116277.1 | trans-2-enoyl-CoA reductase family protein | - |
| JET59_RS10675 (JET59_010675) | 2242562..2242891 | + | 330 | WP_260329167.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T270002 NZ_CP117168:2238010-2238106 [Serratia proteamaculans]
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 125 bp
>AT270002 NZ_CP117168:c2238112-2237988 [Serratia proteamaculans]
ACAAACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
ACAAACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
