Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | shpAB/BrnT-BrnA |
Location | 4173965..4174541 | Replicon | chromosome |
Accession | NZ_CP117033 | ||
Organism | Salmonella enterica strain PIW95_S14_0299 |
Toxin (Protein)
Gene name | shpA | Uniprot ID | M7RG88 |
Locus tag | PQP07_RS20610 | Protein ID | WP_001131963.1 |
Coordinates | 4174254..4174541 (-) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | shpB | Uniprot ID | B5R9R5 |
Locus tag | PQP07_RS20605 | Protein ID | WP_000063142.1 |
Coordinates | 4173965..4174267 (-) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PQP07_RS20590 (4170475) | 4170475..4172625 | + | 2151 | WP_000379927.1 | pyruvate/proton symporter BtsT | - |
PQP07_RS20595 (4172720) | 4172720..4172923 | + | 204 | WP_000460616.1 | YbdD/YjiX family protein | - |
PQP07_RS20600 (4172934) | 4172934..4173890 | + | 957 | WP_000187839.1 | GTPase | - |
PQP07_RS20605 (4173965) | 4173965..4174267 | - | 303 | WP_000063142.1 | BrnA antitoxin family protein | Antitoxin |
PQP07_RS20610 (4174254) | 4174254..4174541 | - | 288 | WP_001131963.1 | BrnT family toxin | Toxin |
PQP07_RS20615 (4174810) | 4174810..4175724 | - | 915 | WP_000290512.1 | restriction endonuclease | - |
PQP07_RS20620 (4175922) | 4175922..4179431 | + | 3510 | WP_001043484.1 | type I restriction-modification system endonuclease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11294.80 Da Isoelectric Point: 9.5894
>T269893 WP_001131963.1 NZ_CP117033:c4174541-4174254 [Salmonella enterica]
MPMEFEWDANKAKSNLRKHGVRFEDAVLVFDDPRHLSRQERYENGEYRWQTLGLVHGIVVILVAHSVRFESGFEVIRIIS
ARKADRKERNRYEHG
MPMEFEWDANKAKSNLRKHGVRFEDAVLVFDDPRHLSRQERYENGEYRWQTLGLVHGIVVILVAHSVRFESGFEVIRIIS
ARKADRKERNRYEHG
Download Length: 288 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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