Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 962877..963148 | Replicon | chromosome |
| Accession | NZ_CP117020 | ||
| Organism | Escherichia coli strain MLI106K3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 962915..963018 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 962877..963148 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL424_RS05015 | 960034..961473 | + | 1440 | WP_049068043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NL424_RS05020 | 961591..961827 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NL424_RS05025 | 961932..962123 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NL424_RS05030 | 962124..962780 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 962877..963148 | + | 272 | - | - | Antitoxin |
| - | 962915..963018 | - | 104 | - | - | Toxin |
| NL424_RS05035 | 963176..963517 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NL424_RS05040 | 963530..964402 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NL424_RS05045 | 964406..964780 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL424_RS05050 | 964919..965149 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL424_RS05055 | 965251..965907 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL424_RS05060 | 965931..966593 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 954647..986933 | 32286 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269856 NZ_CP117020:c963018-962915 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269856 NZ_CP117020:962877-963148 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
