Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 648976..649244 | Replicon | chromosome |
| Accession | NZ_CP117016 | ||
| Organism | Escherichia coli strain MLI121 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 649014..649117 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 648976..649244 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL415_RS03865 | 646133..647572 | + | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NL415_RS03870 | 647690..647926 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NL415_RS03875 | 648031..648222 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NL415_RS03880 | 648223..648879 | - | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| - | 648976..649244 | + | 269 | - | - | Antitoxin |
| - | 649014..649117 | - | 104 | - | - | Toxin |
| NL415_RS03885 | 649274..649615 | - | 342 | WP_000976485.1 | YebY family protein | - |
| NL415_RS03890 | 649628..650500 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| NL415_RS03895 | 650504..650878 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL415_RS03900 | 651017..651247 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL415_RS03905 | 651349..652005 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL415_RS03910 | 652029..652691 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269829 NZ_CP117016:c649117-649014 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT269829 NZ_CP117016:648976-649244 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
