Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2304471..2304739 | Replicon | chromosome |
| Accession | NZ_CP117013 | ||
| Organism | Escherichia coli strain MLI114 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2304598..2304701 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2304471..2304739 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL414_RS11705 | 2301024..2301686 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NL414_RS11710 | 2301710..2302366 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL414_RS11715 | 2302468..2302698 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL414_RS11720 | 2302837..2303211 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL414_RS11725 | 2303215..2304087 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| NL414_RS11730 | 2304100..2304441 | + | 342 | WP_000976485.1 | YebY family protein | - |
| - | 2304471..2304739 | - | 269 | - | - | Antitoxin |
| - | 2304598..2304701 | + | 104 | - | - | Toxin |
| NL414_RS11735 | 2304836..2305492 | + | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| NL414_RS11740 | 2305493..2305684 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NL414_RS11745 | 2305789..2306025 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NL414_RS11750 | 2306143..2307582 | - | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2297159..2320568 | 23409 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269813 NZ_CP117013:2304598-2304701 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT269813 NZ_CP117013:c2304739-2304471 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
