Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2902754..2903025 | Replicon | chromosome |
| Accession | NZ_CP117008 | ||
| Organism | Escherichia coli strain MLI109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2902792..2902895 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2902754..2903025 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL412_RS15015 | 2899911..2901350 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NL412_RS15020 | 2901468..2901704 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NL412_RS15025 | 2901809..2902000 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NL412_RS15030 | 2902001..2902657 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2902754..2903025 | + | 272 | - | - | Antitoxin |
| - | 2902792..2902895 | - | 104 | - | - | Toxin |
| NL412_RS15035 | 2903053..2903394 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NL412_RS15040 | 2903407..2904279 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NL412_RS15045 | 2904283..2904657 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL412_RS15050 | 2904796..2905026 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL412_RS15055 | 2905128..2905784 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL412_RS15060 | 2905808..2906470 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | galU / kdsA | 2886914..3035241 | 148327 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269774 NZ_CP117008:c2902895-2902792 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269774 NZ_CP117008:2902754-2903025 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
